Cell Reports 2024
Impact of eIF2α phosphorylation on the translational landscape of mouse embryonic stem cells
Amiri, M., Kiniry, S.J., Possemato, A.P., Mahmood, N., Basiri, T., Dufour, C.R., Tabatabaei, N., Deng, Q., Bellucci, M.A., Harwalkar, K., Stokes, M.P., Giguère, V., Kaufman, R.J., Yamanaka, Y., Baranov, P.V., Tahmasebi, S. and Sonenberg, N.
PNAS 2023
Nontriplet feature of genetic code in Euplotes ciliates is a result of neutral evolution
Gaydukova, S.A., Moldovan, M.A., Vallesi, A., Heaphy, S.M., Atkins, J.F., Gelfand, M.S. and Baranov, P.V.
Nucleic Acids Research 2023
Monitoring translation in all reading frames downstream of weak stop codons provides mechanistic insights into the impact of nucleotide and cellular contexts
Loughran, G., Li, X., O’Loughlin, S., Atkins, J.F. and Baranov, P.V.
Nature Communications 2022
Thousands of human non-AUG extended proteoforms lack evidence of evolutionary selection among mammals
Fedorova, A.D., Kiniry, S.J., Andreev, D.E., Mudge, J.M. and Baranov, P.V.
Molecular Cell 2022
Lack of evidence for ribosomal frameshifting in ATP7B mRNA decoding
Loughran, G., Fedorova, A.D., Khan, Y.A., Atkins, J.F. and Baranov, P.V.
Genome Biology 2022
Non-AUG translation initiation in mammals
Andreev, D.E., Loughran, G., Fedorova, A.D., Mikhaylova, M.S., Shatsky, I.N. and Baranov, P.V.
Nature 2022
Evaluating ribosomal frameshifting in CCR5 mRNA decoding
Khan, Y.A., Loughran, G., Steckelberg, A.L., Brown, K., Kiniry, S.J., Stewart, H., Baranov, P.V., Kieft, J.S., Firth, A.E. and Atkins, J.F.
Nature Biotechnology 2022
Standardized annotation of translated open reading frames
Mudge, J.M., Ruiz-Orera, J., Prensner, J.R., Brunet, M.A., Calvet, F., Jungreis, I., Gonzalez, J.M., Magrane, M., Martinez, T.F., Schulz, J.F., Yang, Y.T., AlbÃ, M.M., Aspden, J.L., Baranov, P.V., Bazzini, A.A., Bruford, E., Martin, M.J., Calviello, L., Carvunis, A.R., Chen, J., Couso, J.P., Deutsch, E.W., Flicek, P., Frankish, A., Gerstein, M., Hubner, N., Ingolia, N.T., Kellis, M., Menschaert, G., Moritz, R.L., Ohler, U., Roucou, X., Saghatelian, A., Weissman, J.S. and van Heesch, S.
Science 2021
Structural basis of ribosomal frameshifting during translation of the SARS-CoV-2 RNA genome
Bhatt, P.R., Scaiola, A., Loughran, G., Leibundgut, M., Kratzel, A., Meurs, R., Dreos, R., O’Connor, K.M., McMillan, A., Bode, J.W., Thiel, V., Gatfield, D., Atkins, J.F. and Ban. N.
Nature 2020
eIF2α controls memory consolidation via excitatory and somatostatin neurons
Sharma, V., Sood, R., Khlaifia, A., Eslamizade, M.J., Hung, T-Y., Lou, D., Asgarihafshejani, A., Lalzar, M., Kiniry, S.J., Stokes, M.P., Cohen, N., Nelson, A.J., Abell, K., Possemato, A.P., Gal-Ben-Ari, S., Truong, V.T., Wang, P., Yiannakas, A., Saffarzadeh, F., Cuello, A.C., Nader, K., Kaufman, R.J., Costa-Mattioli, M., Baranov, P.V., Quintana, A., Sanz, E., Khoutorsky, A., Lacaille, J-C., Rosenblum, K. and Sonenberg. N.
PNAS 2020
Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF
Loughran, G., Zhdanov, A.V., Mikhaylova, M.S., Rozov, F.N., Datskevich, P.N., Kovalchuk, S.I., Serebryakova, M.V., Kiniry, S.J., Michel, A.M., O’Connor, P.B.F., Papkovsky, D.P., Atkins, J.F., Baranov, P.V., Shatsky, I.N. and Andreev, D.E.
Nature 2018
AMD1 mRNA employs ribosome stalling as a mechanism for molecular memory formation
Yordanova, M.M., Loughran, G., Zhdanov, A.M., Mariotti, M., Kiniry, S.J,, O’Connor, P.B.F., Andreev, D.E., Tzani, I., Saffert, P., Michel, A.M., Gladyshev, V.N., Papkovsky, D.B., Atkins, J.F. and Baranov, P.V.